The intensity of the movement of mineral and organic substances in the agro-forestry catchment is decisive influenced by weather conditions. Intensive drainage caused an increase in the outflow of the substances of the farmstead. Rural farm located on light soils is a major source of groundwater contamination by organic and mineral substances. An important role in the through of pollutants migration played an ecological area, which contributed to a significant reduction in the concentration of the ash components, chlorides and sulfates in groundwater, and consequently reduced the negative impact of farmstead on the water quality in a nearby pond. Periodically functioning supply of forest area by groundwater of the midfield pond contributed to the deterioration of groundwater quality in the forest.