Proper exploitation of waste water treatment plant is strictly connected with monitoring of basic parameters and effectiveness of particular its stages. Legal requirements include not only organic compounds (BOD5, COD) and general suspensions but also highly effective removal of nutrients: nitrogen and phosphorus. Effectiveness of removal of biogenic compounds interferes with temperature fluctuations, effluent quality, problems of active sediment. The aim of this study was to show changes in concentrations of organic compounds, nitrogen and phosphorus in the municipal wastewater after subsequent stages of mechanical-biological treatment. During researches samples were taken down by the wastewater treatment line: raw wastewater, after mechanical treatment, pre-denitrification, dephosphatation, denitrification, nitrification and treated wastewater. Another aspect of this study was determination of COD fractions, and their changes in the municipal wastewater, after the successive stages of mechanical-biological treatment. It allows separation of dissolved and non-dissolved organic substances, taking into account also their biodegradability and the lack of susceptibility to biological decomposition. It can also be a very important method of the processes control during wastewater treatment.